25 Steps to a Faster PC
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21.  Break folders up with large amounts files and few folders, to many folders containing manageable amount of files.

The effect of this is to cut down the amount of time Windows takes to build views when traversing folders. 

Windows may stop and build a view of each folder as you try to get deeper in a folder structure or find one file in a folder of a thousand documents. 

This can take an annoying amount of time.